He definitely saw himself in you the first time.
Since having taken you in after you've suffered quite a lot during the Omnic Crisis, he has been doing all he could to provide the security you needed to live out the best life possible. Sure. He may have been a bit of a bad influence a few times (all according to Ana, it seems), but he certainly wasn't complaining when you got a few of his quirks. In fact, he liked it.
He never admitted it to his team or anybody for that matter, but you were his kid. A kid he thought he lost when the explosion happened.
He could only stand there in shock as he stared at you, having thought that you have died under the rubble. After all, he hadn't got to see if you were alive or not since Moira practically revived him from the dead. He didn't even get an explanation of what happened to you.
It almost drove him insane that he has no knowledge of whether you were alive or if you were dead.
Now, he stood there in silence for another beat before his mind suddenly remembered how to speak. He tried to sound confident. He really did. However, it was hard to do so in this very moment. "... Hey, kiddo."