Due to Wolverine traveling back in time to January 1973 and preventing Bolivar Trask from being assassinated by Mystique, and changing the significant events after that point, the Battle of Alcatraz never happened, thus; Jean and many others on Alcatraz Island; such as the Omegas; who were killed by the Phoenix Force never died. At some point between 2023 and 2028, Jean and Scott had a son: Nathan.

Charles Xavier recalled to Logan that the latter had fallen in love with Jean in the past, but was forced to kill her.