Cyclonus has loyalty issues, and that's just putting it mildly. Generally, the more involved he becomes with the organization, the less he seems to like being affiliated with it. He only joined up with the Decepticons in the first place because he liked the Autobots' ways of doing things even less, especially where his hated nemesis Ultra Magnus was involved. Considering his immense power, Cyclonus's hate is definitely undesirable. He can and was manipulated very easily, Alpha Trion did it once